prof. dr. mohd firdaus bin mohd raih

pensyarah universiti

jabatan fizik gunaan

No. Telefon Rasmi :  0389215961

No. rasmi:
UKM : 03 8921 5555



   Biografi/ Biography :

  • My research is primarily directed at understanding molecular function regulation by exploring the mechanistic atomic level interactions that affect function and/or effect molecular level switching as well as the associated regulatory pathways. To accomplish this, my research group studies the structure, function and evolution of biological macromolecules to compare how the atomic level differences can result in different functions by effecting regulatory or mechanistic changes. We source our data from public repositories such as GenBank and the Protein Data Bank as well as by generating internal data such as genome sequences, transcriptome sequences and methylome sequences from specific experiments. The approaches employed in exploring and investigating these datasets primarily involve bioinformatics, computational biology and genomics but also extend to structural biology (mainly X-ray crystallography), synthetic biology and systems biology. The insights revealed from these investigations can provide clues as to how molecular level regulation and responses in living systems are carried out that eventually lead to an organism’s capacity to adapt to extreme (ie. extremophiles) or diverse environments (ie. such as a bacterial pathogen or parasite adapting to a host) as well as the discovery of novel factors associated with pathogenesis (toxins and pathogenesis/virulence regulation systems). Our understanding of the atomic level interactions that define specific biological mechanisms have led to the development of applications for drug repositioning and tools for the synthetic design of nucleic acid self-assembling structures.

  • nur syatila ab ghani, reeki emrizal, sabrina mohamed moffit, hazrina yusof hamdani, effirul ikhwan ramlan, mohd firdaus-raih.  (2022).  grafss: a webserver for substructure similarity searching and comparisons in the structures of proteins and rna.  - nucleic acids research.  375-383. 

     

    nisa syakila a. rahman, syazalina zahari, saiful effendi syafruddin, mohd firdaus-raih, teck yew low, m. aiman mohtar.  (2022).  functions and mechanisms of protein disulfide isomerase family in cancer emergence.  - cell & bioscience.  1-19. 

     

    singh nivrenjeet, siti waheeda mohd-zin, singh nisheljeet, abu bakar azizi, kamalanathan palaniandy, mohd firdaus-raih, mohd hisam muhamad ariffin, nicholas daniel edward greene, noraishah mydin abdul-aziz.  (2022).  inflammation in embryology: a review of neuroinflammation in spina bifida.  - neuroscience research notes.  1-15. 

     

    george w. mobbs, adli a. aziz, samuel r. dix, g. m. blackburn, sveta e. sedelnikova, thomas c. minshull, mark j. dickman, patrick j. baker, sheila nathan, mohd firdaus raih, david w. rice.  (2022).  molecular basis of specificity and deamidation of eif4a by burkholderia lethal factor 1.  - communications biology.  1-11. 

     

    low teck yew;mohd firdaus bin mohd raih;saiful effendi bin syafruddin;mohamad aimanuddin bin mohtar;lee pey yee.  (2022).  elucidating the mechanism of secretion for human pro-metastatic agr2 protein.  -

     

    george w. mobbs, adli a. aziz, samuel r. dix, g. m. blackburn, sveta e. sedelnikova, thomas c. minshull, mark j. dickman, patrick j. baker, sheila nathan, mohd firdaus raih, david w. rice.  (2022).  molecular basis of specificity and deamidation of eif4a by burkholderia lethal factor 1.  - communications biology.  1-11. 

     

    nisa syakila a. rahman, syazalina zahari, saiful effendi syafruddin, mohd firdaus-raih, teck yew low, m. aiman mohtar.  (2022).  functions and mechanisms of protein disulfide isomerase family in cancer emergence.  - cell & bioscience.  1-19. 

     

    nur syatila ab ghani, reeki emrizal, sabrina mohamed moffit, hazrina yusof hamdani, effirul ikhwan ramlan, mohd firdaus-raih.  (2022).  grafss: a webserver for substructure similarity searching and comparisons in the structures of proteins and rna.  - nucleic acids research.  375-383. 

     

    reeki emrizal, hazrina yusof hamdani, mohd firdaus-raih.  (2021).  graph theoretical methods and workflows for searching and annotation of rna tertiary base motifs and substructures.  - international journal of molecular sciences.  1-19. 

     

    naif h. al-hardan, muhammad azmi abdul hamid, mohd firdaus-raih, lim kar keng, ensaf mohammed al-khalqi, azman jalar.  (2021).  calcium ion-selective electrode based on the facile synthesis of cuo over cu wires.  - journal of materials science: materials in electronics.  1-12. 

     

    noor munyati othman, sri d. appasamy, nadzirah damiri, reeki emrizal, norfarrah mohamed alipiah, effirul ikhwan ramlan, mohd firdaus raih.  (2021).  regulation of glycine cleavage and detoxification by a highly conserved glycine riboswitch in burkholderia spp.  - current microbiology.  2943-2955. 

     

    xin-wei lee, su datt lam, mohd firdaus-raih, kiew-lian wan.  (2020).  molecular characterisation of eimeria tenella porin, a potential anticoccidial drug target.  - sains malaysiana.  755-764. 

     

    hazrina yusof hamdani, mohd firdaus-raih.  (2018).  analisis dan penyaringan data lewah interaksi kelompok bes berikatan hidrogen dalam struktur rna 3-dimensi.  - sains malaysiana. 

     

    jumaat haji adam, mohd afiq aizat juhari, rahmah mohamed, nor azilah abdul wahab, syamsurina arshad, mohd paiz kamaruzaman, mohd firdaus mohd raih & kiew-lian wan.  (2016).  rafflesia tuanku-halimii n. (rafflesiaceae), a new species from peninsular malaysia.  - sains malaysiana.  1589-1595. 

     

    ping-ping yao, mohd firdaus raih, hasidah mohd sidek, noor embi & kiew-lian wan.  (2016).  pencirian molekul glikogen sintase kinase-3 dari eimeria tenella.  - sains malaysiana.  1947-1957. 

     

    george w. mobbs, adli a. aziz, samuel r. dix, g. m. blackburn, sveta e. sedelnikova, thomas c. minshull, mark j. dickman, patrick j. baker, sheila nathan, mohd firdaus raih, david w. rice.  (2022).  molecular basis of specificity and deamidation of eif4a by burkholderia lethal factor 1.  - communications biology.  1-11. 

     

    singh nivrenjeet, siti waheeda mohd-zin, singh nisheljeet, abu bakar azizi, kamalanathan palaniandy, mohd firdaus-raih, mohd hisam muhamad ariffin, nicholas daniel edward greene, noraishah mydin abdul-aziz.  (2022).  inflammation in embryology: a review of neuroinflammation in spina bifida.  - neuroscience research notes.  1-15. 

     

    nur syatila ab ghani, reeki emrizal, sabrina mohamed moffit, hazrina yusof hamdani, effirul ikhwan ramlan, mohd firdaus-raih.  (2022).  grafss: a webserver for substructure similarity searching and comparisons in the structures of proteins and rna.  - nucleic acids research.  375-383. 

     

    nisa syakila a. rahman, syazalina zahari, saiful effendi syafruddin, mohd firdaus-raih, teck yew low, m. aiman mohtar.  (2022).  functions and mechanisms of protein disulfide isomerase family in cancer emergence.  - cell & bioscience.  1-19. 

     

    reeki emrizal, hazrina yusof hamdani, mohd firdaus-raih.  (2021).  graph theoretical methods and workflows for searching and annotation of rna tertiary base motifs and substructures.  - international journal of molecular sciences.  1-19. 

     

    siuk-mun ng, xin-wei lee, kiew-lian wan & mohd firdaus-raih.  (2015).  comparative differential gene expression analysis of nucleus-encoded proteins for rafflesia cantleyi against arabidopsis thaliana.  - the 2015 ukm fst postgraduate colloquium.  030020(1-6). 

     

    intan azlinda ramlee, mohd firdaus-raih & kiew-lian wan.  (2015).  identification and characterization of secreted proteins in eimeria tenella.  - aip conference proceedings.  030023. 

     

    noor munyati othman, ahmad luqman abdul fatah, mohd al akmarul fizree bin md piji, effirul ikhwan ramlan and mohd firdaus raih.  (2015).  identification and cloning of four riboswitches from burkholderia pseudomallei strain k96243.  - the 2015 ukm fst postgraduate colloquium.  1-5. 

     

    nur syamimi yusoff, nadzirah damiri, mohd firdaus-raih.  (2014).  identification of the conserved hypothetical protein bpsl0317 in burkholderia pseudomallei k96243.  - aip conference proceeding - the 2014 ukm fst postgraduate colloquium.  544-548. 

     

    shuhaila mat-sharani, doris hx quay, chyan l ng & mohd firdaus-raih.  (2019).  encyclopedia of bioinformatics and computational biology.  - 7. 

     

    munyati othman, siuk m ng, mohd firdaus-raih.  (2018).  encyclopedia of bioinformatics and computational biology.  - 5. 

     

    nur sa ghani, shandar ahmad, mohd firdaus-raih.  (2018).  encyclopedia of bioinformatics and computational biology.  - 9. 

     

    mohd firdaus-raih, nur syatila abdul ghani.  (2018).  encyclopedia of bioinformatics and computational biology.  - 10. 

     

    suhaila sulaiman, nur s yusoff, ng s mun, haslina makmur, mohd firdaus-raih.  (2018).  encyclopedia of bioinformatics and computational biology.  - 11. 

     

    chyan leong ng & mohd firdaus-raih.  (2019).  encyclopedia of bioinformatics and computational biology.  - 14. 

     

    shuhaila mat-sharani, doris hx quay, chyan l ng & mohd firdaus-raih.  (2019).  encyclopedia of bioinformatics and computational biology.  - 7. 

     

    munyati othman, siuk m ng, mohd firdaus-raih.  (2018).  encyclopedia of bioinformatics and computational biology.  - 5. 

     

    mohd firdaus-raih, nur syatila abdul ghani.  (2018).  encyclopedia of bioinformatics and computational biology.  - 10. 

     

    nur sa ghani, shandar ahmad, mohd firdaus-raih.  (2018).  encyclopedia of bioinformatics and computational biology.  - 9. 

     

    idayu maarof, mohd firdaus raih.  (2021).  a consequence of sequence.  - 204. 

     

    idayu maarof, mohd firdaus raih.  (2016).  the doctor is sick.  - 128. 

     

    nurul fadzillah fadhar, mohd firdaus bin mohd raih, sheila nathan & ng chyan leong.  (2022).  in silico characterization of the hypothetical bpsl0741 towards understanding host-pathogen interaction of burkholderia pseudomallei.  - 46th annual conference of the malaysian society for biochemistry and molecular biology 2022.  78. 

     

    lam su datt;mohd firdaus bin mohd raih.  (2022).  computational structural and functional annotation of the glaciozyma antarctica proteome.  -

     

    nurul fadzillah fadhar, mohd firdaus mohd raih, sheila nathan, ng chyan leong.  (2022).  in silico characterization of the hypothetical bpsl0741 towards understanding host-pathogen interaction of burkholderia pseudomallei.  - 46th annual conference of the malaysian society for biochemistry and molecular biology 2022.  78. 

     

    sabrina mohamed moffit, nur syatila ab ghani, reeki emrizal & mohd firdaus-raih.  (2022).  conserved metal binding acidic residue clusters in unrelated proteins.  - 46th annual conference of the malaysian society for biochemistry and molecular biology.  169. 

     

    low teck yew;mohd firdaus bin mohd raih;saiful effendi bin syafruddin;mohamad aimanuddin bin mohtar;lee pey yee.  (2022).  elucidating the mechanism of secretion for human pro-metastatic agr2 protein.  -